Volume 7, Issue 2, April Issue - 2019, Pages:204-210
|Authors: Zhao zhichang, Gao aiping, Huang jianfeng, Luo ruixiong, Liu kuanliang|
|Abstract: Fruit color in mango (Mangifera indica) is an important trait, but the mechanism of green color inheritance is poorly understood at the molecular level. The present study revealed that in contrast with red mango fruits (M. indica var. Guifei), less anthocyanin production was reported in green mango fruits (M. indica var. Guiqi) during ripening, which was a result of reduced activity of the dihydroflavonol 4-reductase (DFR) enzyme at the translational level. The sequences of the DFR gene in these two varieties are partially similar, except for a single base-pair change at the 116th base position and an approximately 74-bp deletion within the middle portion of the green color DFR gene. The sequence of the DFR protein showed different lengths, consisting of 194 and 328 amino acids in ‘Guiqi’, and ‘Guifei’. The deletion mutation in the green color DFR gene greatly reduced anthocyanin contents in green, ‘Guiqi’ mango fruits. Abbreviations DFR - Dihydroflavonol 4-reductase; NADPH - Nicotinamide adenine dinucleotide phosphate; DNA - Deoxyribonuleic acid; CTAB - Hexadecyl trimethyl ammonium bromide; RACE - Rapid amplification of cDNA ends; ORF - Open reading frame; ANS - Anthocyanidin synthase|
|Full Text: 1 Introduction Anthocyanin biosynthesis and metabolism produces a great number and variety of compounds (Winkel-Shirley, 2001; Park et al., 2004). These molecules play important roles in many fundamental processes of plants, such as the pigmentation of flowers and fruits, signaling, heat exchange, UV resistance, pollen fertility, defense to wounding and fungal attacks and environmental stress responses (Shirley et al., 1995; Dixon & Piava, 1995; Moyano et al., 1996; Weisshaar & Jenkins, 1998; Harborne & Williams, 2000; Cominelli et al., 2005; Miller et al., 2011)). The regulation of the anthocyanin pigments in plants are particularly important in metabolic engineering applications because these compounds act as visual signals that attract the insects and animals for pollination of flower, seed production and dispersal (Holton & Cornish, 1995). Anthocyanin biosynthesis pathway is well established, and the central pathways in this process are highly conserved in plants, such as Arabidopsis, maize and flower plants, had facilitated a sound understanding of the structural genes and transcription factors (structural genes that encode the enzymes that directly participate in the anthocyanin biosynthetic reactions, and transcription factors that regulate the expression of these structural genes and the accumulation of anthocyanin metabolites) involved and the assembly of the relevant enzyme complexes such as PAL, CHS, F3H, DFR, UFGT, MYB, WD40, b HLH etc (Winkel-Shirley, 2001; Shih et al., 2006; Sui et al., 2011; Sun et al., 2015?Sun et al., 2016; Li et al., 2016). The enzyme dihydroflavonol 4-reductase (DFR) catalyzes the stereospecific reduction of dihydroflavonols to leucoanthocyanidins (flavan-3,4-diol) using NADPH as a cofactor (Heller et al., 1985; Kristiansen & Rohde, 1991; Rosati et al., 1987; Martens et al., 2002). Depending upon the plant system, leucoanthocyanidins could be utilized for the synthesis of compounds such as flavan-3-ol [(+)-catechin] as the likely start unit to oligomeric proanthocyanidins which were involved in plant resistance to heat, light, pests and diseases, and regarded as potential health-protecting food and feed (Harborne & Williams, 2000). DFR genes had been isolated from some higher plants such as Malus domestica (Fischer et al., 2003), Pyrus communis (Fischer et al., 2003), Medicago truncatula (Xie et al., 2004), Lotus japonicus (Shimada et al., 2005), Citrus sinensis (Piero et al., 2006), Camellia sinensis (Singh et al., 2009), Populus trichocarpa (Huang et al., 2012)? Ipomoea batatas Lam (Wang et al., 2013) and Ginkgo biloba (Cheng et al., 2013); recombinant proteins produced from these plants had been well characterized. Knowledge of DFR was important to understand various aspects of flavonoid biosynthesis, especially how plants regulate condensed tannins & composition and different stereochemical features of flavan-3,4-diols and related compounds. DFR regarded as central enzyme of the flavonoid pathway and opens possibilities for metabolic engineering of the pathway (Forkmann & Martens, 2001). In order to study the difference color in different mango fruits, especially whether the differences in structural genes or whether theses the differences will affect the formation of anthocyanins. In the present paper, we report on the isolation of a DFR cDNA clone from different color mango peels. The identity of the clones was different by comparison of the nucleotide sequence and amino acids sequence. 2 Materials and Methods 2.1 Plant materials Present study was conducted on 8 years old mango trees (M. indica) cultivars ‘Guiqi’ and ‘Guifei’ from a commercial orchard in the harvest season of 2010 year, in Hainan Island, China. All of the experimental trees received similar cultural treatment regarding fertilization, irrigation, and plant protection. Mature green color (Guiqi) and red color (Guifei) mango fruit were collected and immediately transported to the laboratory. The fruit was sliced and frozen in liquid nitrogen. 2.2 Detection of total anthocyanins and total carotenoids in different color mango peels Ground peel of mango was mixed with acid-ethanol (0.1% HCl, v/v) in 15-ml conical tubes, incubated in the dark for 10 hrs, at 4°C. The mixture was centrifuged for 15 min at 4000 rpm. The supernatant was collected and transferred into 15 ml volumetric flasks for measurement of anthocyanins yield. About 0.5g of the peel sample was used for each treatment. The total anthocyanin content was determined according to the pH-differential methods (Lee et al., 2005; Yang & Zhai, 2010). Extraction of total carotenoids from mango peel was conducted using a solvent extraction system and ultrasonication was run at room temperature. Briefly, triplicate samples of 1 g mango peels were ground with 20 mL of cold acetone (4°C) in a mortar, this mixture vacuum filtered through a funnel using no. 4 filter paper that was 10 cm in diameter (Whatman International Ltd). The filtrate was transferred to a separation funnel together with petroleum ether and water. The two layers were allowed to separate without stirring and the lower layer was discarded. The upper ether layer washed several times with water to eliminate residual acetone. After the water was removed using anhydrous sodium sulfate, the ether phase was transferred to a suitable flask and its volume was adjusted to 10 mL with petroleum ether. The entire procedure was executed under low light conditions in order to prevent carotenoid degradation. Total carotenoid content of mango peels was measured spectrophotometrically using a method described previously by Davies (Davies, 1976). 2 mL mixture was placed in a 3 cm cuvette to measure the absorbance using a UV-Vis spectrophotometer (Thermo Scientific, USA) at 472nm and 508nm. Absorbencies were recorded to obtain both isochromic carotenoid fractions and total carotenoid. 2.3 cDNA and DNA of DFR cloning DNA was isolated from fresh mango leaves samples by CTAB method (Stewart & Via, 1993), while the total RNA was isolated from mango peel samples according to the method of Wan & Wilkins (1994). Reverse transcription was achieved with oligo-d (T)18 primers by using 5ug of total RNA isolated from mango peel and the prime Script II 1st strand cDNA synthesis kit (TaKaRa). To isolate partial cDNA clone, two oligonucleotides were designed on the basis of conserved amino acid sequences of several available DFRs: forward primer (5’GAATCCAAGGATCCYGAGAAYGA’3); reverse primer (5’AAGTACATCCATCCAGTCATYTT3’). The PCR reaction was carried out using the following conditions: 94°C 3 min (1 cycle); 94°C 30s, 55°C 30 s,72°C 1min (30 cycles); 72°C 5 min (1 cycle). An amplification product of 260 bp and its identity was confirmed by sequencing. The 3’ RACE and 5’ RACE of DFR gene was used for the rapid amplification of cDNA ends (RACE) reactions, according to 3’-Full RACE Core Set ver.2.0 and 5’-Full RACE Kit (TaKaRa in Dalian, China). A genomic DNA sequence was obtained using PCR-based methods. The reaction mixture (20ul) contained 10ng DNA, 100 mM dNTPs, 0.5 mM of each primer, 0.5U ExTaqTM DNA polymerase (TaKaRa), and 2ul 10×ExTaqTM PCR buffer. The PCR parameters were one cycle of the following step program: 95°C for 3min, 56°C for 10 s, 72°C for 2min, then 35 cycles of the following program step: 95°C for 30 s, 56°C for 10 s, 72°C for 2 min, and a final extension step of 72°C for 10 min. All PCR products were cloned into pMD-19T (TaKaRa in Dalian, China), using the TOPO TA cloning method. DNA sequence compilation, nucleotide and amino acid sequence comparisons were performed using the LASERGENE DNA software package (DNAstar, Madison, WI). Sequence similarity searching was performed using the BLASTN and BLASTX, nucleic and protein databases at NCBI (http://www.ncbi.nlm.nih.gov). The phylogenetic analysis of DFRs from mango and other species was carried out by alignment with the bioEdit software (http://www.mbio.ncsu.edu/BioEdit/bioedit.html). 2.4 Extraction and assay of enzyme activity of DFR from mango peels 1g mango peels were ground to a fine powder with a mortar and pestle using liquid N2. The powder was then extracted with 5ml cold acetone then centrifuged at 12000g for 10 min, supernatant was discarded. The sediment was added 4ml 100 mM Na2HP04/NaH2P04 extraction buffer (pH 8.8), 18 mM mercaptoethanol. This was then dialysed overnight against the same buffer to give a partially purified extract that was used for all enzyme assays. This fraction was centrifuged at 12000 x g for 20 min. All these procedures were carried out at 4°C. The crude, soluble protein extraction was test according Stafford (Stafford et al., 1982; Stafford et al., 1984). 2.5 Prokaryotic expression and enzyme activity determination of the dihydroflavonol 4-reductase In order to produce fragment for in vitro expression reactions, the cDNA fragment of DFRs gene were amplified with common primer, and inserted into the vector pET32a (Novagen). The expression vector of pET32a::DFR(Guifei) and pET32a::DFR(Guiqi) were obtained. The proteins were synthesized according to the manufacture’s instructions. Proteins were analyzed by sodium dodesyl sulfate (SDS) polyacrylamide gel electrophoresis on 12% gel. The cell of prokaryotic expression were collected by centrifugation, with PBS suspension washing, after centrifugation, resuspended in PBS solution (100ug/ml 0.1% TritonX-100 with lysozyme, 30min, digestion at room temperature), to break the cell in power under the condition of 200W, work 5S, stop 5S, 20 cycles, and repeated 3 times, the liquid is full of enzyme solution. After centrifugation, the enzyme solution was included broth supernatant enzyme solution, and the precipitation enzyme solution. Polypeptide was purified by B-PERTM 6×His Fusion Protein Column Purification Kit (Pierece). The activity of the dihpdroflavonol 4-reductase (DFR) enzyme was detected. 3 Results 3.1 Measurement of anthocyanins and carotenoids in two different color mango peels Anthocyanins and carotenoids were measured in two mango phenotypes of peels (Guiqi, and Guifei). Peel obtained from both mango phenotypes were examined for the presence of detectable amounts of anthocyanin. Result of study suggested the accumulation of 0.321mg/g FW anthocyanins in green mango peel while this was reported0.982mg/g FW in red mango peel (Figure 1). Simultaneously carotenoid accumulation in plant tissues was also measured. The presence of carotenoids contents in the green peels (Guifei) was reported higher than the red mango peels (Figure 1). Thus, red-color mango contains higher concentrations of anthocyanins than green-color mango. The red color of mango was mainly because of higher anthocyanin content and involvement of carotenoid content was not reported in red color. 3.2 Isolation of the DFR gene from mango peels To obtain DFR from Guifei mango, the 260bp cDNA DFR fragments was isolated with two oligonucleotides primers by RT-PCR. The entire length of the DFR cDNA was obtained by the rapid amplification of cDNA ends (RACE) reactions. The full-length DFR cDNA of Guifei mango was 1,260 bp, and the open reading frame was 987 bp, encoding 328 amino acids. The length of DFR DNA was 3,022bp. Both sequences were observed in cDNA and DNA from mango peel, and positions 136-251bp, 420-511bp, 703-1482bp, 1647-2522bp, 2705-2807bp (from the translational start site) of the genomic clones were determined to be five introns (Figure 2).The cDNA and DNA were obtained from 30 ng of total RNA and genomic DNA by using specific primers amplification from mango peels (Guifei, and Guiqi). Sequence analysis of DFR from different color mango peels, it was reported that isolation of a DFR gene from green mango var. ‘Guiqi’, shared more than 92% nucleotide sequence identity with the red mango var. ‘Guifei’. The sequences of DFR in green and red mangos were partially the same, except for a single base-pair change at the 116th base position (C in var. ‘Guifei’, T in var. ‘Guiqi’) and an approximately 74-bp deletion within the middle portion of the green color DFR gene (Figure 3). The sequence of the DFR protein showed different lengths, consisting of 194 and 328 amino acids in the green and the red mango variety afore cited, respectively; there was also one amino acid change at the 32nd base position (A in var. ‘Guifei’, V in var. ‘Guiqi’) and a difference in amino acid sequence from positions 184 to 194 (FQHHKWSPVIP in var. ‘Guiqi’, LVTLHPGLVIG in var. ‘Guifei’) (Figure 4). Genomic DNA of DFRs in different color mango did not show more difference in nucleotide sequence (data not shown). 3.3 Enzyme activity of DFR in different color mango peels In this study, DFR activity was detected in different color mango peel. Result of present study revealed the presence of higher DFR enzyme concentration in the red color mango (Guifei), and this enzyme concentration was followed by the green color mango (Guiqi) (Figure 5). In vitro activity assays of heterologously expressed proteins were performed to investigate the biochemical activity for DFR. The chimeric DFR proteins were purified using affinity chromatography, and as a control the empty vector protein extract was processed in the same manner. The observed activities are consistent with the phenotypes of peels, was higher from the red color mango and lower from the green color mango peel (Figure 6). 4 Discussion Dihydroflavonol 4-redudase (DFR) played a crucial role in producing common and condensed anthocyanins, with a pivotal enzyme in the flavonoid synthetic pathway (Holton & Cornish, 1995). Single or multiple genes encoding DFR protein(s) from plants had been reported for a few genomes (Tanaka et al., 1995; Inagaki et al., 1999; Himi & Noda, 2004). An N-terminal NADP-binding domain that contains a highly conserved region is also present in the DFR amino acid sequence. NAD as a cofactor was from 8 to 251 amino acid sequence, dependent epimerase/dehydratase family which used nucleotide sugar substrates for a variety of chemical. 3beta-hydroxysteroid dehydrogenase (3b-HSD) like, subgroup1, extended (e) SDRs (an uncharacterized subgroup of the 3b-HSD like extended SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD (P)-binding motif of extended-SDRs) was from 7 to 128 amino acid sequence. Color variety in flowers and fruits is mainly the result of mutations in the genes involved in the anthocyanin biosynthesis pathway. Many genetic loci are well known for affecting color change or colorless traits. Furthermore, some of these have been revealed to be structural genes encoding enzymes in the biosynthesis pathway (Holton & Cornish, 1995; Bharti & Khurana, 2003), while others are regulatory genes controlling whole or subsets of structural genes (Yamazaki et al., 2003). Kim et al. (2004) reported that the lack of dihydroflavonol 4-reductase (DFR) transcription in yellow onions is responsible for the color difference between yellow and red onions. The mutant analyses demonstrated that in corresponding mutants of the DFR genes a consistent fruit and flower color phenotype could be observed in plant. The generation of DFR mutants might be functionally redundant in fruits and flowers. In general, random generates mutations without losing gene function, such as inframe mutations (multiple of -3 ntdeletion) or silent mutations (without changes in the amino acid sequence). The deletion of amino acid might result in the failure of forming stacked saturated and aromatic rings, with lost enzyme activity. In present study, isolation of DFR cDNA genome from different color mango peel, and the successful invitro expression of DFR have been reported. The mRNA of DFR was measured in two different color mango peels, the levels consistence with the contents of anthocyanidin in two different colors. Over expression of DFR was correlated with anthocyanin accumulations in the mango peel. These results indicate that DFR successfully interacted with anthocyanin biosynthetic pathway in the mango peel. Further molecular study is required to evaluate DFR activity and to identify other biosynthetic genes which are involved in the anthocyanidin synthase (ANS) and flavonoid synthesis pathway of mango. Expression analyses of these genes would reveal the possible reason of competition and/or blockage in the anthocyanin biosynthesis pathway within mango. These results imply that, although the boiosynthetic palthways share a majority, of common reactions in plant species, there are some important differences among the types of anthocyanin produced by each species. Acknowledgments This work was supported by “National Natural Science Foundation of China” (31471850), “National key research and development plan”?2018YFD1000500?,“the Fundamental Scientific Research Funds for CATAS-TCGRI” (Project No. 1630032017004?1630032017005). The anthour thank He junhu, Yang ziqin, and Li songgang in Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences. Conflict of Interest: All the authors have no conflict of interest|
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